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生物信息学的常用网址

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发表于 2011-5-5 17:12:14 | 显示全部楼层 |阅读模式
从网络上整理出的,大家可以看看,如有遗漏,欢迎跟帖补充!
Database
Nucleotide
NCBI: http://www.ncbi.nlm.nih.gov/
EMBL: http://www.ebi.ac.uk/
DDBJ: http://www.ddbj.nig.ac.jp/
NCGR: http://www.ncgr.org/
Sanger: http://www.sanger.ac.uk/
University of Chicago(推荐): http://sky.bsd.uchicago.edu/
Peking University: http://www.cbi.pku.edu.cn/
GSC: http://genome.wustl.edu/
HUGO: http://www.gene.ucl.ac.uk/hugo/
GenCards: http://bioinformatics.weizmann.ac.il/cards/
EMBNet:http://www.embnet.org/
TIGR:http://www.tigr.org
SWISS-PROT:http://cn.expasy.org
CBI: http://www.cbi.pku.edu.cn/
Biological software : http://bioweb.pasteur.fr/intro-uk.html
http://www.bioinformatics.vg/index2.shtml


Disease & Mutation & Literature

OMIM:http://www.ncbi.nlm.nih.gov/Omim/
HGMD: http://archive.uwcm.ac.uk/uwcm/mg/hgmd0.html
Chromosomal Variant In Man: http://www.wiley.com/legacy/product...ife/borgaonkar/
PubMed: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi

Mapping

UCSC(推荐):http://genome.ucsc.edu/
Ensembl:http://www.ensembl.org/
GDB: http://www.gdb.org/
HUGO: http://www.gdb.org/hugo/
GENATLAS: http://www.dsi.univ-paris5.fr/genatlas/

SNP
dbSNP: http://www.ncbi.nlm.nih.gov/SNP/
http://snp.cshl.org/
HGVbase: http://hgvbase.cgb.ki.se/

Protein

Mips:http://www.mips.biochem.mpg.de/
PIR: http://pir.georgetown.edu/
SRS: http://srs.embl-heidelberg.de:8000/srs5/
ExPASy: http://www.expasy.ch/
The Protein Society: http://www.faseb.org/protein/
PDB:http://www.rcsb.org/pdb/
Protein


Motifs and Domains

Pfam: http://www.sanger.ac.uk/Pfam/
Prosite:http://www.expasy.ch/tools/scanprosite/
SIB:http://hits.isb-sib.ch/cgi-bin/PFSCAN
PRINTS: http://www.bioinf.man.ac.uk/dbbrowser/PRINTS/
Blocks: http://www.blocks.fhcrc.org/
ProDom: http://prodes.toulouse.inra.fr/prodom/doc/prodom.html
SMART: http://smart.embl-heidelberg.de/

Others

BioTech: http://biotech.icmb.utexas.edu/
DHGP: http://www.dhgp.de/
PBIL(Sim4): http://pbil.univ-lyon1.fr/
APBioNET: http://www.apbionet.org/
TRASER: http://genome-www6.stanford.edu/cgi-bin/Traser/traser
TRANSFAC: http://transfac.gbf.de/TRANSFAC/
REBASE: http://rebase.neb.com/rebase/rebase.html
VSNS: http://www.techfak.uni-bielefeld.de/bcd/
PSORT: http://srs.pku.edu.cn:8088/
RAST(Regulatory Sequence Analysis Tools): http://rsat.ulb.ac.be/rsat/
SEMINARS AND COURSES: http://www1.imim.es/main/seminars.html

My bookmarks

多种物种的基因组计划网址:
Mouse http://www.informatics.jax.org/
Rat http://ratmap.gen.gu.se/
Dog http://mendel.berkeley.edu/dog.html
Cow http://locus.jouy.inra.fr/cgi-bin/bovmap/intro2.pl
Pig http://bioinformatics.roslin.ac.uk/databases.html
Chicken http://bioinformatics.roslin.ac.uk/databases.html
Zebra fish http://zfin.org/cgi-bin/webdriver?MIval=aa-ZDB_home.apg
Caenorhabditis elegans http://www.ddbj.nig.ac.jp/
Dicthostelium discoideum http://glamdring.ucsd.edu/
Drosophila
Mosquito http://klab.agsci.colostate.edu/
Arabidopsis http://genome.wustl.edu/gsc/arab/arabidopsis.html
http://www.arabidopsis.org/
Cotton http://algodon.tamu.edu/
Maize http://www.agron.missouri.edu/
Rice http://rgp.dna.affrc.go.jp/

调控位点分析

TFfinder http://www.cbrc.jp/research/db/TFSEARCH.html
Gene Regulation Tools
http://zlab.bu.edu/zlab/gene.shtml
http://www.gene-regulation.com/pub/programs.html#pmatch http://rulai.cshl.edu/cgi-bin/re ... gi?process=software
REPFIND http://zlab.bu.edu/mfrith/cgi-bin/repfind.cgi
Tfsitescan http://www.ifti.org/cgi-bin/ifti/Tfsitescan.pl
The MEME/MAST SYSTEM (motif finder) http://meme.sdsc.edu/meme/website/intro.html
发表于 2011-5-6 10:53:12 | 显示全部楼层
一个真菌有关的基因(组)信息集合:http://www.aftol.org/
The Assembling the Fungal Tree of Life (AFTOL) project is dedicated to significantly enhancing our understanding of the evolution of the Kingdom Fungi, which represents one of the major clades of life.
QQ截图未命名.png
发表于 2011-7-5 13:13:10 | 显示全部楼层
很好的啊。收藏下啊,谢谢
发表于 2011-7-5 16:56:32 | 显示全部楼层
nis19不错
发表于 2011-12-24 10:55:33 | 显示全部楼层
相当好啊nis31
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